Variant report

Variant	rs816546
Chromosome Location	chr3:156147368-156147369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16826288	1.00[CHB][hapmap]
rs6770093	1.00[CHB][hapmap]
rs6777276	1.00[CHB][hapmap]
rs73168612	1.00[ASN][1000 genomes]
rs7648656	1.00[CHB][hapmap]
rs816543	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs9647348	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156145600-156147400	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:156145600-156148200	Enhancers	Colon Smooth Muscle	Colon
4	chr3:156146400-156147400	Enhancers	Stomach Smooth Muscle	stomach
5	chr3:156147000-156147600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:156147000-156149400	Enhancers	NHEK	skin
7	chr3:156147200-156147400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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