Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:156185328..156188069-chr3:156189453..156191902,2	MCF-7	breast:
2	chr3:156185413..156187564-chr3:156188607..156190807,2	K562	blood:
3	chr3:156185413..156187125-chr3:156187347..156190107,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13315111	0.98[EUR][1000 genomes]
rs13315136	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs13323374	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1397192	1.00[CHB][hapmap]
rs16826202	1.00[JPT][hapmap]
rs16826288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41267915	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777276	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797169	1.00[JPT][hapmap]
rs6801966	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023974	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629988	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs7641703	0.87[EUR][1000 genomes]
rs7648656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816546	1.00[CHB][hapmap]
rs9647348	1.00[CHB][hapmap]
rs9841854	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:156182200-156188800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:156182200-156189600	Weak transcription	Aorta	Aorta
5	chr3:156183400-156189200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:156183400-156200400	Weak transcription	HSMM	muscle
7	chr3:156185800-156188000	Enhancers	K562	blood
8	chr3:156186400-156187800	Enhancers	HSMMtube	muscle
9	chr3:156186400-156188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:156186800-156189200	Weak transcription	Colon Smooth Muscle	Colon

Quick Search: