Variant report

Variant	rs16826202
Chromosome Location	chr3:156171782-156171783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:156171721-156171879	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156166581..156169828-chr3:156169890..156173085,3	K562	blood:
2	chr3:156170456..156173440-chr3:156192233..156194610,2	MCF-7	breast:
3	chr3:156171454..156173209-chr3:156251921..156254749,2	K562	blood:

Variant related genes	Relation type
KCNAB1	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10428085	0.81[EUR][1000 genomes]
rs10428230	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs10428233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922769	0.94[EUR][1000 genomes]
rs13315136	1.00[JPT][hapmap]
rs13317461	0.81[EUR][1000 genomes]
rs13317645	0.81[EUR][1000 genomes]
rs13323374	1.00[JPT][hapmap]
rs13324719	0.81[EUR][1000 genomes]
rs13324809	0.81[EUR][1000 genomes]
rs16826198	0.94[EUR][1000 genomes]
rs16826199	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16826288	1.00[JPT][hapmap]
rs3732515	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3732516	0.81[EUR][1000 genomes]
rs3755631	0.83[EUR][1000 genomes]
rs3821423	0.81[EUR][1000 genomes]
rs4574239	0.81[EUR][1000 genomes]
rs55671429	0.82[EUR][1000 genomes]
rs55754142	0.94[EUR][1000 genomes]
rs55754499	0.89[EUR][1000 genomes]
rs55896573	0.94[EUR][1000 genomes]
rs56059225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56232722	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56261626	0.94[EUR][1000 genomes]
rs56762981	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61147236	0.81[EUR][1000 genomes]
rs6770093	1.00[JPT][hapmap]
rs6772280	0.81[EUR][1000 genomes]
rs6777276	1.00[JPT][hapmap]
rs6797169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797279	0.81[EUR][1000 genomes]
rs73873371	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873379	0.90[EUR][1000 genomes]
rs73873383	0.94[EUR][1000 genomes]
rs7629988	1.00[JPT][hapmap]
rs7648656	1.00[JPT][hapmap]
rs7650612	0.81[EUR][1000 genomes]
rs9289968	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:156169600-156174000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156170000-156173000	Weak transcription	K562	blood
4	chr3:156170200-156176800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156170400-156174400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:156170600-156176800	Weak transcription	Aorta	Aorta
7	chr3:156171000-156175400	Weak transcription	Right Ventricle	heart
8	chr3:156171400-156172200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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