Variant report

Variant	rs6772280
Chromosome Location	chr3:156162567-156162568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156161858..156163464-chr3:156266713..156269382,2	K562	blood:

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10428085	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428230	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs10428233	0.81[EUR][1000 genomes]
rs10513488	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11915154	0.92[JPT][hapmap]
rs11917301	0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11922769	0.83[EUR][1000 genomes]
rs11924393	0.92[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11924460	0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs11928395	0.91[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs12496391	0.90[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs13317461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13317645	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13324719	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13324766	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13324809	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826198	0.83[EUR][1000 genomes]
rs16826199	0.83[EUR][1000 genomes]
rs16826202	0.81[EUR][1000 genomes]
rs35764962	0.91[EUR][1000 genomes]
rs3732515	0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs3732516	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3755631	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs3821423	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4574239	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671429	0.93[EUR][1000 genomes]
rs55754142	0.83[EUR][1000 genomes]
rs55896573	0.87[EUR][1000 genomes]
rs56059225	0.81[EUR][1000 genomes]
rs56261626	0.83[EUR][1000 genomes]
rs56762981	0.81[EUR][1000 genomes]
rs61147236	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6797169	0.83[EUR][1000 genomes]
rs6797279	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873371	0.83[EUR][1000 genomes]
rs73873383	0.83[EUR][1000 genomes]
rs7650612	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156157200-156164000	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:156160000-156162800	Enhancers	Colon Smooth Muscle	Colon
3	chr3:156160600-156162600	Enhancers	Brain Hippocampus Middle	brain
4	chr3:156160600-156162600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr3:156160800-156162800	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:156161000-156162600	Enhancers	Left Ventricle	heart
7	chr3:156161000-156163000	Enhancers	Fetal Heart	heart
8	chr3:156161000-156163200	Enhancers	Fetal Muscle Leg	muscle
9	chr3:156161200-156162600	Enhancers	Brain Anterior Caudate	brain
10	chr3:156161600-156162600	Enhancers	Fetal Stomach	stomach
11	chr3:156161600-156164200	Enhancers	HSMMtube	muscle
12	chr3:156162200-156162800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:156162200-156169400	Weak transcription	Aorta	Aorta
14	chr3:156162400-156162600	Enhancers	Stomach Smooth Muscle	stomach

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