Variant report

Variant	rs11922769
Chromosome Location	chr3:156169422-156169423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:156169314-156169565	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156166581..156169828-chr3:156169890..156173085,3	K562	blood:
2	chr3:156166753..156169667-chr3:156173519..156175055,2	K562	blood:
3	chr3:156162147..156165006-chr3:156167983..156169875,2	K562	blood:
4	chr3:156166346..156168652-chr3:156168846..156171078,2	MCF-7	breast:

Variant related genes	Relation type
KCNAB1-AS1	TF binding region
KCNAB1	TF binding region
ENSG00000242370	Chromatin interaction
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10428085	0.83[EUR][1000 genomes]
rs10428230	0.80[EUR][1000 genomes]
rs10428233	0.94[EUR][1000 genomes]
rs11922703	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13317461	0.83[EUR][1000 genomes]
rs13317645	0.83[EUR][1000 genomes]
rs13324719	0.83[EUR][1000 genomes]
rs13324766	0.81[EUR][1000 genomes]
rs13324809	0.83[EUR][1000 genomes]
rs16826198	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16826199	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16826202	0.94[EUR][1000 genomes]
rs3732515	0.96[EUR][1000 genomes]
rs3732516	0.83[EUR][1000 genomes]
rs3755631	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3821423	0.83[EUR][1000 genomes]
rs4574239	0.83[EUR][1000 genomes]
rs55671429	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55754142	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55754499	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55896573	0.96[EUR][1000 genomes]
rs56059225	0.94[EUR][1000 genomes]
rs56261626	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56762981	0.94[EUR][1000 genomes]
rs61147236	0.83[EUR][1000 genomes]
rs6772280	0.83[EUR][1000 genomes]
rs6789361	0.96[ASN][1000 genomes]
rs6797169	0.92[EUR][1000 genomes]
rs6797279	0.83[EUR][1000 genomes]
rs73873371	0.92[EUR][1000 genomes]
rs73873379	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73873383	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7650612	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:156167600-156169600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156168200-156170200	Enhancers	Stomach Smooth Muscle	stomach
4	chr3:156168800-156170200	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:156169000-156170400	Enhancers	Colon Smooth Muscle	Colon
6	chr3:156169200-156170000	Enhancers	K562	blood
7	chr3:156169400-156170200	Genic enhancers	Aorta	Aorta

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