Variant report

Variant	rs10428085
Chromosome Location	chr3:156164320-156164321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10428230	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs10428233	0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10513488	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs11915154	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs11917301	1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11922769	0.83[EUR][1000 genomes]
rs13317461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13317645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13324719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13324766	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13324809	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16826198	0.83[EUR][1000 genomes]
rs16826199	0.85[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs16826202	0.81[EUR][1000 genomes]
rs35764962	0.91[EUR][1000 genomes]
rs3732515	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3755631	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs3821423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4574239	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55671429	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55754142	0.83[EUR][1000 genomes]
rs55896573	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56059225	0.81[EUR][1000 genomes]
rs56261626	0.83[EUR][1000 genomes]
rs56762981	0.81[EUR][1000 genomes]
rs61147236	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6772280	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796811	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6797169	0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs6797279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73873371	0.83[EUR][1000 genomes]
rs73873383	0.83[EUR][1000 genomes]
rs7650612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289968	0.82[TSI][hapmap]
rs958129	1.00[GIH][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162200-156169400	Weak transcription	Aorta	Aorta
2	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:156162800-156167600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:156162800-156168200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156162800-156169000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:156163200-156164400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:156163200-156164800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:156163200-156165000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:156164000-156168800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:156164200-156167600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links