Variant report

Variant	rs55671429
Chromosome Location	chr3:156168745-156168746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156166581..156169828-chr3:156169890..156173085,3	K562	blood:
2	chr3:156166753..156169667-chr3:156173519..156175055,2	K562	blood:
3	chr3:156162147..156165006-chr3:156167983..156169875,2	K562	blood:

Variant related genes	Relation type
ENSG00000242370	Chromatin interaction
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10428085	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10428230	0.91[EUR][1000 genomes]
rs10428233	0.82[EUR][1000 genomes]
rs11917301	0.88[EUR][1000 genomes]
rs11922703	0.83[ASN][1000 genomes]
rs11922769	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13317461	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13317645	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13324719	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13324766	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13324809	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16826198	0.87[EUR][1000 genomes]
rs16826199	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16826202	0.82[EUR][1000 genomes]
rs35764962	0.88[EUR][1000 genomes]
rs3732515	0.83[EUR][1000 genomes]
rs3732516	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3755631	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3821423	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4574239	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55754142	0.87[EUR][1000 genomes]
rs55754499	0.83[EUR][1000 genomes]
rs55896573	0.83[EUR][1000 genomes]
rs56059225	0.82[EUR][1000 genomes]
rs56261626	0.87[EUR][1000 genomes]
rs56762981	0.82[EUR][1000 genomes]
rs61147236	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6772280	0.93[EUR][1000 genomes]
rs6789361	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6796811	0.89[EUR][1000 genomes]
rs6797279	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73873379	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73873383	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7650612	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162200-156169400	Weak transcription	Aorta	Aorta
2	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:156162800-156169000	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:156164000-156168800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:156167600-156169600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:156168000-156169200	Weak transcription	K562	blood
7	chr3:156168200-156170200	Enhancers	Stomach Smooth Muscle	stomach

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