Variant report

Variant	rs55896573
Chromosome Location	chr3:156163133-156163134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156161858..156163464-chr3:156266713..156269382,2	K562	blood:

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10428085	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10428230	0.84[EUR][1000 genomes]
rs10428233	0.94[EUR][1000 genomes]
rs10513488	0.88[ASN][1000 genomes]
rs11915154	0.86[ASN][1000 genomes]
rs11922769	0.96[EUR][1000 genomes]
rs13317461	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317645	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13324719	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13324766	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13324809	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16826198	0.96[EUR][1000 genomes]
rs16826199	0.96[EUR][1000 genomes]
rs16826202	0.94[EUR][1000 genomes]
rs3732515	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732516	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755631	0.85[EUR][1000 genomes]
rs3821423	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574239	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55671429	0.83[EUR][1000 genomes]
rs55754142	0.96[EUR][1000 genomes]
rs55754499	0.91[EUR][1000 genomes]
rs56059225	0.94[EUR][1000 genomes]
rs56261626	0.96[EUR][1000 genomes]
rs56762981	0.94[EUR][1000 genomes]
rs61147236	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772280	0.87[EUR][1000 genomes]
rs6796811	0.83[EUR][1000 genomes]
rs6797169	0.96[EUR][1000 genomes]
rs6797279	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873371	0.96[EUR][1000 genomes]
rs73873379	0.92[EUR][1000 genomes]
rs73873383	0.96[EUR][1000 genomes]
rs7650612	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156157200-156164000	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:156161000-156163200	Enhancers	Fetal Muscle Leg	muscle
3	chr3:156161600-156164200	Enhancers	HSMMtube	muscle
4	chr3:156162200-156169400	Weak transcription	Aorta	Aorta
5	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:156162800-156167600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:156162800-156168200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:156162800-156169000	Weak transcription	Colon Smooth Muscle	Colon

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