Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10428085	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs11915154	0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs11924393	0.84[JPT][hapmap]
rs11924460	0.92[JPT][hapmap]
rs11928395	0.84[JPT][hapmap]
rs12496391	0.92[JPT][hapmap]
rs13317461	0.88[ASN][1000 genomes]
rs13317645	0.88[ASN][1000 genomes]
rs13324719	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs13324766	0.82[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs13324809	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs3732515	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs3732516	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs3821423	0.88[ASN][1000 genomes]
rs4574239	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs55896573	0.88[ASN][1000 genomes]
rs61147236	0.88[ASN][1000 genomes]
rs6772280	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs6777084	0.87[TSI][hapmap]
rs6796811	0.85[CEU][hapmap]
rs6797279	0.88[ASN][1000 genomes]
rs7650612	0.86[ASN][1000 genomes]
rs958129	0.92[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156147400-156157200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:156150800-156160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:156153000-156156200	Weak transcription	Fetal Heart	heart
5	chr3:156153600-156155800	Weak transcription	NHEK	skin
6	chr3:156153600-156157800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: