Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156159054..156161750-chr3:156163169..156166486,4	K562	blood:

Variant related genes	Relation type
ENSG00000242370	Chromatin interaction

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513488	0.92[JPT][hapmap]
rs1106297	1.00[EUR][1000 genomes]
rs1106299	1.00[EUR][1000 genomes]
rs11915154	1.00[JPT][hapmap]
rs11924393	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11924460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11928395	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493762	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs13324766	0.80[JPT][hapmap]
rs13324809	0.83[JPT][hapmap]
rs2293196	1.00[EUR][1000 genomes]
rs3732515	0.83[JPT][hapmap]
rs3755632	1.00[EUR][1000 genomes]
rs3772263	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6772280	0.90[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6796811	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs9826583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156157200-156164000	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:156160000-156162800	Enhancers	Colon Smooth Muscle	Colon
3	chr3:156160400-156162200	Enhancers	Stomach Smooth Muscle	stomach
4	chr3:156160600-156162600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:156160600-156162600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr3:156160800-156161800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:156160800-156162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:156160800-156162400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:156160800-156162800	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:156161000-156162200	Enhancers	Right Ventricle	heart
11	chr3:156161000-156162400	Enhancers	Brain Substantia Nigra	brain
12	chr3:156161000-156162600	Enhancers	Left Ventricle	heart
13	chr3:156161000-156163000	Enhancers	Fetal Heart	heart
14	chr3:156161000-156163200	Enhancers	Fetal Muscle Leg	muscle
15	chr3:156161200-156162600	Enhancers	Brain Anterior Caudate	brain
16	chr3:156161400-156161800	Weak transcription	Brain Angular Gyrus	brain
17	chr3:156161600-156162000	Enhancers	Right Atrium	heart
18	chr3:156161600-156162200	Enhancers	Aorta	Aorta
19	chr3:156161600-156162400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:156161600-156162600	Enhancers	Fetal Stomach	stomach
21	chr3:156161600-156164200	Enhancers	HSMMtube	muscle

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