Variant report

Variant	rs3772263
Chromosome Location	chr3:156171358-156171359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1106297	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1106299	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11924393	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11924460	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11928395	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12493762	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12496391	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1357434	0.82[ASN][1000 genomes]
rs2293196	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3755632	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3755633	0.82[ASN][1000 genomes]
rs3772267	0.82[ASN][1000 genomes]
rs3796168	0.82[ASN][1000 genomes]
rs9289967	0.87[ASN][1000 genomes]
rs9826583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:156169600-156174000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156170000-156173000	Weak transcription	K562	blood
4	chr3:156170200-156176800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156170400-156174400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:156170600-156176800	Weak transcription	Aorta	Aorta
7	chr3:156170800-156171400	Enhancers	HUVEC	blood vessel
8	chr3:156171000-156175400	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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