Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:156173808-156174078	K562	blood:	n/a	n/a
2	USF1	chr3:156173455-156173985	H1-hESC	embryonic stem cell:	n/a	chr3:156173713-156173724

Variant related genes	Relation type
KCNAB1	TF binding region

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1106297	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1106299	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11924393	1.00[EUR][1000 genomes]
rs11924460	1.00[EUR][1000 genomes]
rs11928395	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs12496391	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs13324766	0.86[JPT][hapmap]
rs1357434	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2293196	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755632	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755633	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3772263	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3772267	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3796168	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs6789361	0.88[JPT][hapmap]
rs9289967	0.84[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs9826583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:156169600-156174000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156170200-156176800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:156170400-156174400	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:156170600-156176800	Weak transcription	Aorta	Aorta
6	chr3:156171000-156175400	Weak transcription	Right Ventricle	heart
7	chr3:156172200-156174600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:156173000-156175400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:156173000-156178200	Weak transcription	Left Ventricle	heart
10	chr3:156173000-156180400	Enhancers	K562	blood
11	chr3:156173400-156174600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:156173400-156175800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:156173400-156177000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:156173600-156174800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:156173600-156175200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:156173800-156174600	Weak transcription	Esophagus	oesophagus
17	chr3:156173800-156174600	Weak transcription	Pancreas	Pancrea
18	chr3:156173800-156175200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:156173800-156175200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:156173800-156176600	Enhancers	HUES48 Cell Line	embryonic stem cell

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