Variant report

Variant	rs1357434
Chromosome Location	chr3:156183157-156183158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1106297	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs1106299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12054064	1.00[CEU][hapmap]
rs12493762	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs16826030	1.00[CEU][hapmap]
rs16826100	1.00[CEU][hapmap]
rs16826101	1.00[CEU][hapmap]
rs17317344	1.00[CEU][hapmap]
rs2272112	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2293196	1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs3755632	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs3755633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772263	0.82[ASN][1000 genomes]
rs3772267	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3796168	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6441068	1.00[CEU][hapmap]
rs6441072	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6791462	1.00[CEU][hapmap]
rs6796127	1.00[CEU][hapmap]
rs9289967	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs9823622	1.00[CEU][hapmap]
rs9824778	1.00[CEU][hapmap]
rs9855009	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156177000-156183200	Weak transcription	Pancreas	Pancrea
3	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156180000-156183800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:156180000-156186000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:156181800-156183200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:156181800-156183600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:156182000-156183200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:156182000-156183200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:156182000-156183400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:156182200-156183200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:156182200-156183200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:156182200-156183200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:156182200-156186400	Weak transcription	HSMMtube	muscle
15	chr3:156182200-156188800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:156182200-156189600	Weak transcription	Aorta	Aorta
17	chr3:156182800-156183200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:156182800-156183400	Enhancers	HSMM	muscle
19	chr3:156183000-156183200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:156183000-156183400	Enhancers	Fetal Heart	heart
21	chr3:156183000-156183400	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:156183000-156183400	Flanking Active TSS	K562	blood

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