Variant report

Variant	rs2272112
Chromosome Location	chr3:156177675-156177676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156177261..156180742-chr3:156201480..156205067,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12053933	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12054064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs1357434	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16826030	1.00[CEU][hapmap]
rs16826100	1.00[CEU][hapmap]
rs16826101	1.00[CEU][hapmap]
rs17317344	1.00[CEU][hapmap]
rs2272113	1.00[ASN][1000 genomes]
rs3755633	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6441068	1.00[CEU][hapmap]
rs6441072	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6791462	1.00[CEU][hapmap]
rs6796127	1.00[CEU][hapmap]
rs9823622	1.00[CEU][hapmap]
rs9824778	1.00[CEU][hapmap]
rs9855009	1.00[CEU][hapmap]
rs9990240	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156173000-156178200	Weak transcription	Left Ventricle	heart
2	chr3:156173000-156180400	Enhancers	K562	blood
3	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:156175000-156178200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:156175200-156177800	Weak transcription	Brain Anterior Caudate	brain
6	chr3:156175400-156179000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:156175400-156180200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156175600-156180400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:156175600-156180600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:156175800-156180600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:156176200-156178000	Weak transcription	Right Ventricle	heart
12	chr3:156176200-156179200	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:156176200-156180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:156176400-156180000	Enhancers	Colon Smooth Muscle	Colon
15	chr3:156176600-156179200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:156176800-156178400	Enhancers	Aorta	Aorta
17	chr3:156176800-156178400	Enhancers	Fetal Stomach	stomach
18	chr3:156177000-156178200	Enhancers	Primary hematopoietic stem cells	blood
19	chr3:156177000-156180000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:156177000-156180000	Enhancers	Fetal Heart	heart
21	chr3:156177000-156180600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:156177000-156183200	Weak transcription	Pancreas	Pancrea
23	chr3:156177200-156178400	Enhancers	Psoas Muscle	Psoas
24	chr3:156177200-156179000	Enhancers	GM12878-XiMat	blood
25	chr3:156177200-156180400	Enhancers	Stomach Smooth Muscle	stomach
26	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:156177400-156178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:156177400-156179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:156177400-156180200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:156177600-156179200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:156177600-156179400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr3:156177600-156182800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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