Variant report

Variant	rs12053933
Chromosome Location	chr3:156176714-156176715
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1106299	1.00[MEX][hapmap]
rs12054064	1.00[CHB][hapmap];0.87[YRI][hapmap];0.96[ASN][1000 genomes]
rs12163648	1.00[MEX][hapmap]
rs2272112	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2272113	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875708	1.00[EUR][1000 genomes]
rs73875709	1.00[EUR][1000 genomes]
rs9878855	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990240	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156170200-156176800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:156170600-156176800	Weak transcription	Aorta	Aorta
3	chr3:156173000-156178200	Weak transcription	Left Ventricle	heart
4	chr3:156173000-156180400	Enhancers	K562	blood
5	chr3:156173400-156177000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:156174600-156177200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:156174800-156176800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:156174800-156176800	Weak transcription	Pancreas	Pancrea
9	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:156175000-156178200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:156175200-156177200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156175200-156177200	Weak transcription	NHEK	skin
13	chr3:156175200-156177800	Weak transcription	Brain Anterior Caudate	brain
14	chr3:156175400-156179000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr3:156175400-156180200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:156175600-156176800	Weak transcription	Esophagus	oesophagus
17	chr3:156175600-156180400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:156175600-156180600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:156175800-156180600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:156176200-156178000	Weak transcription	Right Ventricle	heart
21	chr3:156176200-156179200	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:156176200-156180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:156176400-156176800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:156176400-156180000	Enhancers	Colon Smooth Muscle	Colon
25	chr3:156176600-156176800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:156176600-156179200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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