Variant report

Variant	rs9878855
Chromosome Location	chr3:156183359-156183360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1106299	1.00[MEX][hapmap]
rs12053933	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12163648	1.00[MEX][hapmap]
rs13315136	1.00[CHD][hapmap]
rs13323310	1.00[CHB][hapmap]
rs13323374	1.00[CHD][hapmap]
rs2272113	1.00[EUR][1000 genomes]
rs73875708	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73875709	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7629988	1.00[CHD][hapmap]
rs9880939	1.00[CHB][hapmap]
rs9990240	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:156180000-156183800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:156180000-156186000	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:156181800-156183600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:156182000-156183400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:156182200-156186400	Weak transcription	HSMMtube	muscle
8	chr3:156182200-156188800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:156182200-156189600	Weak transcription	Aorta	Aorta
10	chr3:156182800-156183400	Enhancers	HSMM	muscle
11	chr3:156183000-156183400	Enhancers	Fetal Heart	heart
12	chr3:156183000-156183400	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:156183000-156183400	Flanking Active TSS	K562	blood
14	chr3:156183200-156183400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:156183200-156183400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:156183200-156183400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:156183200-156183400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:156183200-156183600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:156183200-156183600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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