Variant report

Variant	rs9990240
Chromosome Location	chr3:156175384-156175385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156164530..156166342-chr3:156174319..156176025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242370	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12053933	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12054064	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13323310	1.00[CHB][hapmap]
rs2272112	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272113	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56252144	0.86[EUR][1000 genomes]
rs9878855	1.00[CHB][hapmap]
rs9880939	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156170200-156176800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:156170600-156176800	Weak transcription	Aorta	Aorta
3	chr3:156171000-156175400	Weak transcription	Right Ventricle	heart
4	chr3:156173000-156175400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:156173000-156178200	Weak transcription	Left Ventricle	heart
6	chr3:156173000-156180400	Enhancers	K562	blood
7	chr3:156173400-156175800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:156173400-156177000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:156173800-156176600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:156174400-156175400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr3:156174400-156175400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:156174400-156175600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:156174400-156176000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:156174600-156175600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:156174600-156175600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:156174600-156175600	Enhancers	Esophagus	oesophagus
17	chr3:156174600-156177200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:156174800-156176800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:156174800-156176800	Weak transcription	Pancreas	Pancrea
20	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:156175000-156175600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:156175000-156178200	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:156175200-156175600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:156175200-156175600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:156175200-156175600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:156175200-156175600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr3:156175200-156176400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:156175200-156177200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:156175200-156177200	Weak transcription	NHEK	skin
30	chr3:156175200-156177800	Weak transcription	Brain Anterior Caudate	brain

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