Variant report

Variant	rs56252144
Chromosome Location	chr3:156192624-156192625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156191666..156193768-chr3:156224996..156227628,2	K562	blood:
2	chr3:156165881..156166850-chr3:156191700..156193084,7	MCF-7	breast:
3	chr3:156191921..156192893-chr3:156227224..156227801,2	MCF-7	breast:
4	chr3:156165812..156167236-chr3:156191962..156193152,4	MCF-7	breast:
5	chr3:155891797..155892723-chr3:156192017..156192958,3	MCF-7	breast:
6	chr3:155891752..155892645-chr3:156192096..156193523,3	MCF-7	breast:
7	chr3:155868156..155868774-chr3:156192493..156193283,2	MCF-7	breast:
8	chr3:156170456..156173440-chr3:156192233..156194610,2	MCF-7	breast:
9	chr3:156167496..156168267-chr3:156192060..156193012,2	MCF-7	breast:

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12054064	0.83[AMR][1000 genomes]
rs17417784	0.83[AMR][1000 genomes]
rs6441072	0.86[EUR][1000 genomes]
rs73023956	1.00[AFR][1000 genomes]
rs9990240	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156183400-156200400	Weak transcription	HSMM	muscle
2	chr3:156187800-156200800	Weak transcription	HSMMtube	muscle
3	chr3:156190000-156194600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:156190000-156195200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:156190000-156202400	Weak transcription	Aorta	Aorta
6	chr3:156190800-156196800	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:156191400-156195400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:156191400-156196800	Weak transcription	Fetal Stomach	stomach
9	chr3:156191800-156194400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:156192400-156198800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:156192600-156192800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr3:156192600-156192800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr3:156192600-156193000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:156192600-156193000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr3:156192600-156193000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
16	chr3:156192600-156193000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:156192600-156193000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr3:156192600-156193000	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr3:156192600-156193000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr3:156192600-156193000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr3:156192600-156193000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:156192600-156193000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:156192600-156193000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:156192600-156193000	Enhancers	Colon Smooth Muscle	Colon
25	chr3:156192600-156193200	Active TSS	K562	blood

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