Variant report

Variant	rs9855009
Chromosome Location	chr3:156073089-156073090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12054064	1.00[CEU][hapmap]
rs1357434	1.00[CEU][hapmap]
rs16826030	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs16826037	0.83[AMR][1000 genomes]
rs16826100	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs16826101	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16826111	0.91[EUR][1000 genomes]
rs17238588	0.91[EUR][1000 genomes]
rs17317344	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2272112	1.00[CEU][hapmap]
rs3755633	1.00[CEU][hapmap]
rs3856672	0.91[EUR][1000 genomes]
rs55973260	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6441062	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441068	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6441072	1.00[CEU][hapmap]
rs6765899	1.00[MEX][hapmap]
rs6775545	0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6791462	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6796127	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6806552	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs73016002	0.83[AMR][1000 genomes]
rs73017905	0.83[AMR][1000 genomes]
rs73017919	0.83[AMR][1000 genomes]
rs73873328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634841	0.83[AMR][1000 genomes]
rs7635610	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9823622	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824778	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs9828203	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9830004	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9839152	0.83[AMR][1000 genomes]
rs9844410	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9867561	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872444	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9873235	0.94[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9874012	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156069400-156074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:156069800-156076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:156070800-156074600	Weak transcription	Right Atrium	heart
4	chr3:156071400-156074400	Weak transcription	Fetal Heart	heart
5	chr3:156071600-156076000	Weak transcription	Hela-S3	cervix
6	chr3:156072600-156073200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:156072600-156073200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:156073000-156073400	Enhancers	HUES6 Cell Line	embryonic stem cell

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