Variant report

Variant	rs6806552
Chromosome Location	chr3:156077514-156077515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156068154..156070454-chr3:156076598..156078421,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs12163648	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs13327461	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs28368547	1.00[EUR][1000 genomes]
rs3755629	0.81[YRI][hapmap]
rs4630897	1.00[EUR][1000 genomes]
rs55973260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59046488	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6441062	0.83[AMR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6764802	1.00[EUR][1000 genomes]
rs6765899	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs73014109	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs73873328	0.83[AMR][1000 genomes]
rs73873329	0.83[AMR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635610	0.94[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648151	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9810962	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9823622	0.83[AMR][1000 genomes]
rs9828203	0.94[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833026	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844410	0.83[AMR][1000 genomes]
rs9855009	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9867561	0.83[AMR][1000 genomes]
rs9872444	0.83[AMR][1000 genomes]
rs9873235	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874012	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877749	1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156074800-156079000	Weak transcription	Right Atrium	heart
2	chr3:156075000-156078800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:156076400-156078600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:156076400-156078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:156076400-156078800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:156076400-156082800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:156076400-156084000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:156076400-156091600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:156076600-156083000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:156076600-156083200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:156077000-156077600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr3:156077000-156077600	Enhancers	HUVEC	blood vessel
13	chr3:156077000-156078600	Weak transcription	Fetal Heart	heart
14	chr3:156077200-156078600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:156077400-156078800	Weak transcription	Hela-S3	cervix
16	chr3:156077400-156086000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links