Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16826030	0.91[EUR][1000 genomes]
rs16826037	0.83[AMR][1000 genomes]
rs16826100	0.91[EUR][1000 genomes]
rs16826101	0.91[EUR][1000 genomes]
rs16826111	0.91[EUR][1000 genomes]
rs17238588	0.91[EUR][1000 genomes]
rs17317344	0.91[EUR][1000 genomes]
rs3856672	0.91[EUR][1000 genomes]
rs55973260	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6441062	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441068	1.00[EUR][1000 genomes]
rs6775545	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6791462	0.91[EUR][1000 genomes]
rs6796127	1.00[EUR][1000 genomes]
rs6806552	0.83[AMR][1000 genomes]
rs73016002	0.83[AMR][1000 genomes]
rs73017905	0.83[AMR][1000 genomes]
rs73017919	0.83[AMR][1000 genomes]
rs73873328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634841	0.83[AMR][1000 genomes]
rs7635610	0.83[AMR][1000 genomes]
rs9823622	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9828203	0.83[AMR][1000 genomes]
rs9830004	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9839152	0.83[AMR][1000 genomes]
rs9844410	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9855009	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872444	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9873235	0.83[AMR][1000 genomes]
rs9874012	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156069400-156072600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:156069400-156074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:156069800-156076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:156070800-156074600	Weak transcription	Right Atrium	heart
5	chr3:156071400-156074400	Weak transcription	Fetal Heart	heart
6	chr3:156071600-156076000	Weak transcription	Hela-S3	cervix

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