Variant report

Variant	rs73017919
Chromosome Location	chr3:156085973-156085974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156085716..156088226-chr3:156095271..156097532,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs12163648	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs13327461	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs28368547	1.00[EUR][1000 genomes]
rs4630897	1.00[EUR][1000 genomes]
rs55973260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59046488	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6441062	0.83[AMR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6764802	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs6806552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014109	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs73873328	0.83[AMR][1000 genomes]
rs73873329	0.83[AMR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635610	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648151	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9810962	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9823622	0.83[AMR][1000 genomes]
rs9828203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833026	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844410	0.83[AMR][1000 genomes]
rs9855009	0.83[AMR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9867561	0.83[AMR][1000 genomes]
rs9872444	0.83[AMR][1000 genomes]
rs9873235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874012	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877749	1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1793356	chr3:156079516-156093505	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1803569	chr3:156081835-156093273	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1813303	chr3:156081835-156093505	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1814153	chr3:156081835-156093505	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156076400-156091600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156077400-156086000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:156082800-156086200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:156082800-156086400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:156082800-156086600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:156083200-156086200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:156083400-156086600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:156083400-156086600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:156083800-156090200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:156084600-156090200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:156085200-156086200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:156085200-156086800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:156085400-156086400	Enhancers	Fetal Stomach	stomach
14	chr3:156085400-156086800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:156085600-156087600	Weak transcription	Fetal Brain Male	brain

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