Variant report

Variant	rs58463289
Chromosome Location	chr3:156149702-156149703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156132391..156134937-chr3:156148326..156149878,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs12163648	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs13327461	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs28368547	1.00[EUR][1000 genomes]
rs4630897	1.00[EUR][1000 genomes]
rs55973260	1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6764802	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775545	1.00[EUR][1000 genomes]
rs6794030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806552	1.00[EUR][1000 genomes]
rs73014109	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	1.00[EUR][1000 genomes]
rs73017905	1.00[EUR][1000 genomes]
rs73017919	1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019935	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	1.00[EUR][1000 genomes]
rs7635610	1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9810962	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9828203	1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	1.00[EUR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9873235	1.00[EUR][1000 genomes]
rs9874012	1.00[EUR][1000 genomes]
rs9877749	1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156147400-156157200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:156148200-156151000	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:156148400-156151400	Enhancers	HMEC	breast
5	chr3:156148400-156153400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:156148600-156153200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:156149200-156150000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156149400-156149800	Flanking Active TSS	NHEK	skin

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