Variant report

Variant	rs16826610
Chromosome Location	chr3:156321932-156321933
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156321168..156324067-chr3:156355856..156357983,2	K562	blood:
2	chr3:156292781..156295460-chr3:156320968..156322481,2	K562	blood:
3	chr3:156320674..156323591-chr3:156876577..156880396,4	K562	blood:
4	chr3:156270366..156273743-chr3:156320812..156324805,6	K562	blood:
5	chr3:156320543..156323381-chr3:156327683..156330508,2	MCF-7	breast:
6	chr3:156318948..156323685-chr3:156384396..156387913,5	K562	blood:
7	chr3:156316378..156327816-chr3:156388248..156396556,24	K562	blood:
8	chr3:156320945..156324067-chr3:156355856..156358815,3	K562	blood:
9	chr3:156297615..156299147-chr3:156321451..156323674,2	K562	blood:
10	chr3:156320674..156325066-chr3:156876352..156880396,5	K562	blood:
11	chr3:156317690..156325697-chr3:156390438..156395080,16	K562	blood:
12	chr3:156270517..156273451-chr3:156321286..156324455,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11918032	1.00[EUR][1000 genomes]
rs11918873	1.00[EUR][1000 genomes]
rs11918949	1.00[EUR][1000 genomes]
rs11925276	1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[EUR][1000 genomes]
rs73015891	1.00[EUR][1000 genomes]
rs73017741	1.00[EUR][1000 genomes]
rs73019707	1.00[EUR][1000 genomes]
rs73019709	1.00[EUR][1000 genomes]
rs73019730	1.00[EUR][1000 genomes]
rs73019732	1.00[EUR][1000 genomes]
rs73019733	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs7612186	1.00[EUR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7623810	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156312000-156323000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:156312600-156323000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156312800-156323400	Weak transcription	Brain Substantia Nigra	brain
4	chr3:156316000-156323600	Weak transcription	Brain Germinal Matrix	brain
5	chr3:156316600-156323400	Weak transcription	Ovary	ovary
6	chr3:156317600-156322400	Weak transcription	Left Ventricle	heart
7	chr3:156317600-156322600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:156317600-156322600	Weak transcription	Fetal Heart	heart
9	chr3:156317600-156323000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:156317600-156323000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:156317600-156323000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:156317600-156323200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:156317600-156323200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:156317600-156323600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:156317600-156323600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:156318000-156322800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:156318000-156323000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:156318800-156323400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:156319400-156322400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:156319800-156322800	Enhancers	K562	blood
21	chr3:156319800-156323400	Enhancers	Fetal Intestine Small	intestine
22	chr3:156320400-156323000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:156320400-156323200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:156320400-156323800	Weak transcription	A549	lung
25	chr3:156320800-156322400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:156320800-156322400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:156320800-156322400	Weak transcription	HSMM	muscle
28	chr3:156320800-156322600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:156320800-156323200	Weak transcription	HMEC	breast
30	chr3:156320800-156323400	Weak transcription	NHEK	skin
31	chr3:156320800-156323600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:156321000-156322400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:156321000-156323600	Enhancers	Fetal Intestine Large	intestine
34	chr3:156321200-156322600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr3:156321400-156322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:156321400-156323600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:156321400-156323600	Enhancers	GM12878-XiMat	blood
38	chr3:156321600-156323000	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:156321600-156323400	Weak transcription	Right Atrium	heart
40	chr3:156321600-156323600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:156321800-156322200	Enhancers	Aorta	Aorta
42	chr3:156321800-156323000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:156321800-156323200	Weak transcription	Colon Smooth Muscle	Colon

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