Variant report

Variant	rs56772168
Chromosome Location	chr3:156557483-156557484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156537501..156540468-chr3:156557246..156559245,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11918032	1.00[EUR][1000 genomes]
rs11918873	1.00[EUR][1000 genomes]
rs11918949	1.00[EUR][1000 genomes]
rs11921057	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925276	1.00[EUR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57676345	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[EUR][1000 genomes]
rs6789293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[EUR][1000 genomes]
rs73015891	1.00[EUR][1000 genomes]
rs73017741	1.00[EUR][1000 genomes]
rs73019707	1.00[EUR][1000 genomes]
rs73019709	1.00[EUR][1000 genomes]
rs73019730	1.00[EUR][1000 genomes]
rs73019732	1.00[EUR][1000 genomes]
rs73019733	1.00[EUR][1000 genomes]
rs73021795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021801	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025844	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027741	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027764	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612186	1.00[EUR][1000 genomes]
rs7623810	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7635251	1.00[AMR][1000 genomes]
rs7645166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156545000-156559600	Weak transcription	Pancreas	Pancrea
2	chr3:156545800-156558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:156554000-156558200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:156554400-156558400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:156554400-156561000	Weak transcription	Aorta	Aorta
6	chr3:156555400-156558800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:156555400-156560400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:156555400-156560400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156555400-156560400	Weak transcription	Osteobl	bone
10	chr3:156555400-156560800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:156555600-156560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:156555600-156560600	Weak transcription	NHDF-Ad	bronchial
13	chr3:156556800-156558200	Weak transcription	HepG2	liver
14	chr3:156557200-156561000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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