Variant report
| Variant | rs73027764 |
|---|---|
| Chromosome Location | chr3:156651357-156651358 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156646088..156648107-chr3:156651326..156653714,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11921057 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1482867 | 1.00[AMR][1000 genomes] |
| rs16827186 | 1.00[AMR][1000 genomes] |
| rs56772168 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57676345 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59516322 | 1.00[AMR][1000 genomes] |
| rs6789293 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73021795 | 1.00[AMR][1000 genomes] |
| rs73021801 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73025844 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73025863 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73025882 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73025895 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73025901 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73027741 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73027753 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7612563 | 1.00[AMR][1000 genomes] |
| rs7635251 | 1.00[AMR][1000 genomes] |
| rs7645166 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7652081 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829765 | chr3:156568263-156718496 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv592120 | chr3:156626091-156691604 | Enhancers Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156646600-156652600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
