Variant report

Variant	rs1482867
Chromosome Location	chr3:156805890-156805891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr3:156805783-156808016	GM15510	blood:	n/a	n/a
2	RFX5	chr3:156805865-156806010	Hela-S3	cervix:	n/a	n/a
3	MTA3	chr3:156805641-156808538	GM12878	blood:	n/a	n/a
4	TCF12	chr3:156805798-156807554	A549	lung:	n/a	n/a
5	POLR2A	chr3:156805461-156807506	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:156805657-156808095	K562	blood:	n/a	n/a
7	NRF1	chr3:156805875-156807482	SK-N-SH	brain:	n/a	chr3:156807037-156807046 chr3:156807036-156807047 chr3:156806968-156806982 chr3:156806970-156806979 chr3:156806965-156806979 chr3:156807037-156807048 chr3:156806968-156806979
8	POLR2A	chr3:156805462-156807413	U87	brain:	n/a	n/a
9	POLR2A	chr3:156805588-156808045	K562	blood:	n/a	n/a
10	HCFC1	chr3:156805773-156808025	K562	blood:	n/a	n/a
11	ESRRA	chr3:156805610-156808472	GM12878	blood:	n/a	n/a
12	HA-E2F1	chr3:156805874-156807708	MCF-7	breast:	n/a	chr3:156806969-156806978 chr3:156807038-156807047 chr3:156807006-156807017 chr3:156806541-156806556 chr3:156806762-156806774
13	POLR2A	chr3:156805704-156807415	HepG2	liver:	n/a	n/a
14	TEAD4	chr3:156805573-156808115	K562	blood:	n/a	n/a
15	POLR2A	chr3:156805651-156807990	K562	blood:	n/a	n/a
16	GTF2B	chr3:156805613-156805946	K562	blood:	n/a	n/a
17	POLR2A	chr3:156805544-156808065	K562	blood:	n/a	n/a
18	REST	chr3:156805627-156807623	H1-neurons	neurons:	n/a	chr3:156807116-156807124
19	POLR2A	chr3:156805649-156808116	GM12892	blood:	n/a	n/a
20	CUX1	chr3:156805761-156806718	K562	blood:	n/a	n/a
21	MAX	chr3:156805855-156807696	A549	lung:	n/a	n/a
22	CHD1	chr3:156804332-156808188	IMR90	lung:	n/a	chr3:156804389-156804396 chr3:156806828-156806838
23	POLR2A	chr3:156805882-156807327	Hela-S3	cervix:	n/a	n/a
24	WRNIP1	chr3:156805860-156808535	GM12878	blood:	n/a	n/a
25	POLR2A	chr3:156805745-156807389	MCF10A-Er-Src	breast:	n/a	n/a
26	MTA3	chr3:156805884-156807908	GM12878	blood:	n/a	n/a
27	RCOR1	chr3:156805882-156808407	GM12878	blood:	n/a	n/a
28	POLR2A	chr3:156805660-156807995	GM12878	blood:	n/a	n/a
29	POLR2A	chr3:156805645-156808106	GM12878	blood:	n/a	n/a
30	SMARCC1	chr3:156805186-156807901	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr3:156805696-156808062	GM19099	blood:	n/a	n/a
32	POLR2A	chr3:156805719-156807340	PANC-1	pancreas:	n/a	n/a
33	POLR2A	chr3:156805441-156807764	SK-N-MC	brain:	n/a	n/a
34	POLR2A	chr3:156805513-156808063	GM12892	blood:	n/a	n/a
35	MYBL2	chr3:156805873-156807365	HepG2	liver:	n/a	n/a
36	POLR2A	chr3:156805512-156808228	GM12878	blood:	n/a	n/a
37	POLR2A	chr3:156805670-156807267	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr3:156805401-156807419	U87	brain:	n/a	n/a
39	POLR2A	chr3:156805450-156807397	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr3:156805530-156808022	GM18505	blood:	n/a	n/a
41	TBP	chr3:156805593-156805964	K562	blood:	n/a	n/a
42	POLR2A	chr3:156805589-156807953	GM12892	blood:	n/a	n/a
43	MAX	chr3:156805846-156807567	HepG2	liver:	n/a	n/a
44	HEY1	chr3:156805839-156807378	HepG2	liver:	n/a	chr3:156807009-156807024
45	POLR2A	chr3:156805599-156808170	K562	blood:	n/a	n/a
46	GATA2	chr3:156805823-156807851	SH-SY5Y	brain:	n/a	chr3:156807372-156807389 chr3:156807381-156807390
47	POLR2A	chr3:156805648-156808399	GM12891	blood:	n/a	n/a
48	POLR2A	chr3:156805718-156807994	GM12878	blood:	n/a	n/a
49	POLR2A	chr3:156805587-156807341	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr3:156805730-156808137	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156795065..156797909-chr3:156803634..156806168,2	MCF-7	breast:
2	chr3:156796731..156800466-chr3:156804546..156806701,3	K562	blood:
3	chr3:156389452..156396391-chr3:156801976..156809206,19	MCF-7	breast:
4	chr3:156802503..156804431-chr3:156804748..156806767,2	K562	blood:
5	chr3:156805364..156807403-chr3:156827263..156830005,3	K562	blood:
6	chr3:156802474..156811977-chr3:156831792..156841748,16	K562	blood:
7	chr3:156805521..156807475-chr3:156845446..156847445,2	MCF-7	breast:
8	chr3:156805375..156807418-chr3:156837311..156838839,2	K562	blood:
9	chr3:156804281..156807670-chr3:156825990..156830438,8	K562	blood:
10	chr3:156534258..156535825-chr3:156804883..156807461,2	MCF-7	breast:
11	chr3:156805484..156807283-chr3:156838884..156841098,2	MCF-7	breast:
12	chr3:156804607..156806107-chr3:156875762..156877898,2	K562	blood:
13	chr3:156391529..156394159-chr3:156805680..156808214,2	K562	blood:
14	chr3:156398476..156400686-chr3:156804081..156806959,2	K562	blood:
15	chr3:156392368..156393885-chr3:156805103..156807150,2	MCF-7	breast:

Variant related genes	Relation type
LINC00881	TF binding region
ENSG00000241544	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000243629	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11921057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827186	1.00[AMR][1000 genomes]
rs16827190	1.00[EUR][1000 genomes]
rs16827209	1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	1.00[EUR][1000 genomes]
rs57676345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	1.00[EUR][1000 genomes]
rs6778746	1.00[EUR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73025844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027764	1.00[AMR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs73873627	1.00[ASN][1000 genomes]
rs7612563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621847	1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7635251	1.00[AMR][1000 genomes]
rs7645166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
2	chr3:156800000-156806000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:156800200-156806000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:156801000-156806000	Weak transcription	Esophagus	oesophagus
5	chr3:156803000-156806000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:156803000-156806200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:156803600-156806000	Enhancers	Fetal Stomach	stomach
8	chr3:156804000-156806000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:156804000-156806000	Weak transcription	Left Ventricle	heart
10	chr3:156804200-156806200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:156804200-156806400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr3:156804600-156806000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:156804600-156806000	Enhancers	Fetal Intestine Large	intestine
14	chr3:156804600-156806000	Enhancers	Fetal Intestine Small	intestine
15	chr3:156804600-156806000	Enhancers	Stomach Mucosa	stomach
16	chr3:156804600-156806400	Flanking Active TSS	Fetal Heart	heart
17	chr3:156804800-156806200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:156804800-156806400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:156805200-156806000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:156805200-156806000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:156805200-156806000	Enhancers	Adipose Nuclei	Adipose
22	chr3:156805200-156806000	Enhancers	Fetal Kidney	kidney
23	chr3:156805200-156806200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr3:156805200-156806200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:156805200-156806200	Flanking Active TSS	NHLF	lung
26	chr3:156805200-156806400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr3:156805200-156806400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr3:156805200-156806400	Enhancers	Small Intestine	intestine
29	chr3:156805200-156808000	Flanking Active TSS	NHEK	skin
30	chr3:156805400-156806000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:156805400-156806000	Weak transcription	Ovary	ovary
32	chr3:156805400-156806200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:156805400-156806200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr3:156805400-156806400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:156805400-156806400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:156805400-156806400	Flanking Active TSS	GM12878-XiMat	blood
37	chr3:156805400-156807800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:156805600-156806000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr3:156805600-156806000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr3:156805600-156806000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:156805600-156806000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:156805600-156806000	Flanking Active TSS	Right Ventricle	heart
43	chr3:156805600-156806200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:156805600-156806200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:156805600-156806200	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr3:156805600-156806200	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr3:156805600-156806200	Enhancers	Fetal Thymus	thymus
48	chr3:156805600-156806200	Enhancers	Psoas Muscle	Psoas
49	chr3:156805600-156806200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr3:156805600-156806200	Flanking Active TSS	HepG2	liver

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