Variant report

Variant	rs6791852
Chromosome Location	chr3:156796733-156796734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:156796315-156796743	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156534268..156536474-chr3:156794522..156796810,2	MCF-7	breast:
2	chr3:156795065..156797909-chr3:156803634..156806168,2	MCF-7	breast:
3	chr3:156790821..156793384-chr3:156795606..156798078,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241544	TF binding region
ENSG00000240875	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11921057	1.00[EUR][1000 genomes]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
2	chr3:156789200-156799200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:156790800-156797200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156791400-156796800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:156792400-156799000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:156793400-156796800	Enhancers	HSMMtube	muscle
7	chr3:156793400-156797000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:156793400-156797000	Enhancers	Rectal Smooth Muscle	rectum
9	chr3:156793400-156798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156793600-156799200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
12	chr3:156793800-156799200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:156793800-156799200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:156793800-156799200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:156793800-156799600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:156794000-156796800	Enhancers	NHLF	lung
17	chr3:156794000-156799000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:156794000-156799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:156794000-156799200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:156794000-156799400	Weak transcription	Fetal Thymus	thymus
21	chr3:156794000-156799800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:156794200-156797600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:156794200-156799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:156794200-156799000	Weak transcription	HMEC	breast
25	chr3:156794200-156799200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:156794200-156799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:156794200-156804000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:156794400-156798800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:156794400-156799200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:156794400-156799600	Weak transcription	Liver	Liver
31	chr3:156795000-156797200	Enhancers	Fetal Heart	heart
32	chr3:156795000-156805000	Weak transcription	Right Ventricle	heart
33	chr3:156795400-156796800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:156795400-156796800	Enhancers	NHDF-Ad	bronchial
35	chr3:156795400-156797000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:156795400-156799000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:156795400-156799200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:156795400-156799200	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:156795600-156797000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:156795600-156799000	Weak transcription	HSMM	muscle
41	chr3:156795600-156799200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:156795600-156799200	Weak transcription	Brain Anterior Caudate	brain
43	chr3:156795600-156799400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:156795600-156799800	Weak transcription	Left Ventricle	heart
45	chr3:156795800-156799200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:156796000-156797400	Weak transcription	Fetal Kidney	kidney
47	chr3:156796000-156799000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr3:156796000-156799200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr3:156796200-156797000	Enhancers	Osteobl	bone
50	chr3:156796200-156797600	Weak transcription	GM12878-XiMat	blood

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