Variant report

Variant	rs59516322
Chromosome Location	chr3:156804598-156804599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr3:156804332-156808188	IMR90	lung:	n/a	chr3:156804389-156804396 chr3:156806828-156806838

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156795065..156797909-chr3:156803634..156806168,2	MCF-7	breast:
2	chr3:156796731..156800466-chr3:156804546..156806701,3	K562	blood:
3	chr3:156389452..156396391-chr3:156801976..156809206,19	MCF-7	breast:
4	chr3:156802474..156811977-chr3:156831792..156841748,16	K562	blood:
5	chr3:156270788..156273586-chr3:156803317..156805424,3	MCF-7	breast:
6	chr3:156796738..156798688-chr3:156803752..156805514,2	K562	blood:
7	chr3:156804281..156807670-chr3:156825990..156830438,8	K562	blood:
8	chr3:156398476..156400686-chr3:156804081..156806959,2	K562	blood:

No data

Variant related genes	Relation type
LINC00881	TF binding region
ENSG00000243629	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000241544	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11921057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1482867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827186	1.00[AMR][1000 genomes]
rs16827190	1.00[EUR][1000 genomes]
rs16827209	1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	1.00[EUR][1000 genomes]
rs57676345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	1.00[EUR][1000 genomes]
rs6778746	1.00[EUR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73025844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027764	1.00[AMR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621847	1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7635251	1.00[AMR][1000 genomes]
rs7645166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
2	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:156795000-156805000	Weak transcription	Right Ventricle	heart
4	chr3:156798200-156805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:156799000-156804600	Enhancers	Fetal Heart	heart
6	chr3:156800000-156804600	Weak transcription	Stomach Mucosa	stomach
7	chr3:156800000-156804600	Weak transcription	A549	lung
8	chr3:156800000-156804800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:156800000-156805000	Weak transcription	HUVEC	blood vessel
10	chr3:156800000-156805200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:156800000-156805200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:156800000-156805200	Weak transcription	Fetal Kidney	kidney
13	chr3:156800000-156805200	Weak transcription	Small Intestine	intestine
14	chr3:156800000-156805600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:156800000-156805600	Weak transcription	Fetal Thymus	thymus
16	chr3:156800000-156806000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:156800200-156804600	Weak transcription	Fetal Intestine Small	intestine
18	chr3:156800200-156805200	Weak transcription	Adipose Nuclei	Adipose
19	chr3:156800200-156805200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:156800200-156805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:156800200-156805800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:156800200-156805800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:156800200-156806000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:156800400-156804600	Weak transcription	HepG2	liver
25	chr3:156800400-156805000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:156800400-156805600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:156800400-156805600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:156800400-156805800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:156800600-156804600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:156800600-156804800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:156800600-156805000	Weak transcription	Hela-S3	cervix
32	chr3:156800600-156805400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:156800600-156805800	Enhancers	HMEC	breast
34	chr3:156801000-156804600	Weak transcription	K562	blood
35	chr3:156801000-156805000	Weak transcription	Liver	Liver
36	chr3:156801000-156806000	Weak transcription	Esophagus	oesophagus
37	chr3:156801200-156804800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:156801400-156804600	Weak transcription	NHLF	lung
39	chr3:156801600-156805600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:156802400-156805400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr3:156803000-156805000	Enhancers	Right Atrium	heart
42	chr3:156803000-156805200	Enhancers	Psoas Muscle	Psoas
43	chr3:156803000-156805600	Enhancers	Brain Angular Gyrus	brain
44	chr3:156803000-156805800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:156803000-156805800	Enhancers	Fetal Muscle Leg	muscle
46	chr3:156803000-156806000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr3:156803000-156806200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:156803200-156805600	Enhancers	Colon Smooth Muscle	Colon
49	chr3:156803200-156805600	Enhancers	Stomach Smooth Muscle	stomach
50	chr3:156803400-156805200	Enhancers	NHEK	skin

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