Variant report
| Variant | rs7635251 |
|---|---|
| Chromosome Location | chr3:156639583-156639584 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11921057 | 1.00[AMR][1000 genomes] |
| rs1482867 | 1.00[AMR][1000 genomes] |
| rs16827186 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56772168 | 1.00[AMR][1000 genomes] |
| rs57676345 | 1.00[AMR][1000 genomes] |
| rs59516322 | 1.00[AMR][1000 genomes] |
| rs6789293 | 1.00[AMR][1000 genomes] |
| rs73021795 | 1.00[AMR][1000 genomes] |
| rs73021801 | 1.00[AMR][1000 genomes] |
| rs73025844 | 1.00[AMR][1000 genomes] |
| rs73025863 | 1.00[AMR][1000 genomes] |
| rs73025882 | 1.00[AMR][1000 genomes] |
| rs73025895 | 1.00[AMR][1000 genomes] |
| rs73025901 | 1.00[AMR][1000 genomes] |
| rs73027741 | 1.00[AMR][1000 genomes] |
| rs73027753 | 1.00[AMR][1000 genomes] |
| rs73027764 | 1.00[AMR][1000 genomes] |
| rs7645166 | 1.00[AMR][1000 genomes] |
| rs7652081 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829765 | chr3:156568263-156718496 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv592120 | chr3:156626091-156691604 | Enhancers Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156637400-156645600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
