Variant report

Variant	rs73021795
Chromosome Location	chr3:156541294-156541295
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156527592..156531932-chr3:156540848..156546879,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230457	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11918032	1.00[EUR][1000 genomes]
rs11918873	1.00[EUR][1000 genomes]
rs11918949	1.00[EUR][1000 genomes]
rs11921057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925276	1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57676345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[EUR][1000 genomes]
rs6789293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[EUR][1000 genomes]
rs73015891	1.00[EUR][1000 genomes]
rs73017741	1.00[EUR][1000 genomes]
rs73019707	1.00[EUR][1000 genomes]
rs73019709	1.00[EUR][1000 genomes]
rs73019730	1.00[EUR][1000 genomes]
rs73019732	1.00[EUR][1000 genomes]
rs73019733	1.00[EUR][1000 genomes]
rs73021801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025882	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027764	1.00[AMR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612186	1.00[EUR][1000 genomes]
rs7623810	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7635251	1.00[AMR][1000 genomes]
rs7645166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156535400-156543400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156536200-156543200	Weak transcription	Fetal Kidney	kidney
3	chr3:156536400-156542400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:156536400-156542400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:156536400-156543000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:156536400-156543200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:156536400-156543200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:156536400-156543200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:156536400-156543200	Weak transcription	Thymus	Thymus
10	chr3:156536600-156541600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:156536800-156541800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:156537000-156541800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:156537000-156543200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:156537000-156543400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:156537000-156543400	Weak transcription	Liver	Liver
16	chr3:156537000-156543600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:156537000-156543600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:156537200-156542600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:156537600-156542400	Weak transcription	K562	blood
20	chr3:156538000-156543400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:156538600-156543200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:156538600-156543400	Weak transcription	NHLF	lung
23	chr3:156538800-156542000	Weak transcription	NHEK	skin
24	chr3:156538800-156542200	Weak transcription	A549	lung
25	chr3:156538800-156543200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:156538800-156543200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:156538800-156543200	Weak transcription	NHDF-Ad	bronchial
28	chr3:156538800-156543400	Weak transcription	HSMMtube	muscle
29	chr3:156539000-156542000	Weak transcription	Stomach Mucosa	stomach
30	chr3:156539000-156542400	Weak transcription	Hela-S3	cervix
31	chr3:156539000-156543200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:156539000-156543200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:156539000-156543200	Weak transcription	HMEC	breast
34	chr3:156539000-156543200	Weak transcription	HSMM	muscle
35	chr3:156539000-156543200	Weak transcription	HUVEC	blood vessel
36	chr3:156539000-156543200	Weak transcription	Osteobl	bone
37	chr3:156539000-156543400	Weak transcription	NH-A	brain
38	chr3:156539200-156543200	Weak transcription	GM12878-XiMat	blood
39	chr3:156539200-156543400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:156540800-156541800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:156540800-156542200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr3:156541000-156541400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr3:156541000-156541400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:156541200-156541400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
45	chr3:156541200-156541800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:156541200-156541800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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