Variant report

Variant	rs7623810
Chromosome Location	chr3:156460349-156460350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156455142..156458106-chr3:156458193..156461275,4	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11918032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921057	1.00[EUR][1000 genomes]
rs11925276	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs6763863	1.00[AMR][1000 genomes]
rs6768485	1.00[AMR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs7612186	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156446400-156464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:156447800-156464200	Weak transcription	HSMM	muscle
4	chr3:156447800-156464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:156447800-156465000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:156448200-156462800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:156448200-156464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:156448400-156464600	Weak transcription	NHEK	skin
10	chr3:156450800-156461600	Weak transcription	HepG2	liver
11	chr3:156456000-156461800	Weak transcription	Fetal Intestine Small	intestine
12	chr3:156459200-156461000	Enhancers	Fetal Thymus	thymus
13	chr3:156459400-156464200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:156459600-156460400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:156459800-156460400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:156459800-156460800	Enhancers	Fetal Muscle Leg	muscle
17	chr3:156460000-156461000	Weak transcription	Stomach Mucosa	stomach
18	chr3:156460000-156461600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:156460000-156464400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:156460000-156465600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:156460000-156468400	Weak transcription	Pancreas	Pancrea

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