Variant report
| Variant | rs7631744 |
|---|---|
| Chromosome Location | chr3:156284848-156284849 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156275181..156279220-chr3:156281237..156284848,5 | K562 | blood: | |
| 2 | chr3:156283209..156285446-chr3:156322401..156324352,2 | K562 | blood: | |
| 3 | chr3:156279739..156281832-chr3:156282650..156285022,2 | K562 | blood: | |
| 4 | chr3:156284101..156285886-chr3:156287389..156290304,2 | K562 | blood: | |
| 5 | chr3:156271972..156274209-chr3:156282458..156285844,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000114850 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11918032 | 1.00[AMR][1000 genomes] |
| rs11918873 | 1.00[AMR][1000 genomes] |
| rs11918949 | 1.00[AMR][1000 genomes] |
| rs11925276 | 1.00[AMR][1000 genomes] |
| rs12107929 | 1.00[AMR][1000 genomes] |
| rs12107942 | 1.00[AMR][1000 genomes] |
| rs16826541 | 1.00[AMR][1000 genomes] |
| rs16826543 | 1.00[AMR][1000 genomes] |
| rs6763863 | 1.00[AMR][1000 genomes] |
| rs6768485 | 1.00[AMR][1000 genomes] |
| rs6788106 | 1.00[AMR][1000 genomes] |
| rs72558059 | 1.00[AMR][1000 genomes] |
| rs73014000 | 1.00[AMR][1000 genomes] |
| rs73015891 | 1.00[AMR][1000 genomes] |
| rs73017741 | 1.00[AMR][1000 genomes] |
| rs73019707 | 1.00[AMR][1000 genomes] |
| rs73019709 | 1.00[AMR][1000 genomes] |
| rs73019730 | 1.00[AMR][1000 genomes] |
| rs73019732 | 1.00[AMR][1000 genomes] |
| rs73019733 | 1.00[AMR][1000 genomes] |
| rs7612186 | 1.00[AMR][1000 genomes] |
| rs7623810 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014755 | chr3:155889430-156411894 | Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv829764 | chr3:156174824-156347774 | Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
