Variant report

Variant	rs73017741
Chromosome Location	chr3:156479620-156479621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156478908..156481855-chr3:156482060..156485286,3	MCF-7	breast:
2	chr3:156476830..156479789-chr3:156862694..156865587,2	K562	blood:
3	chr3:156479506..156481300-chr3:156485653..156488163,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11918032	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918873	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921057	1.00[EUR][1000 genomes]
rs11925276	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs6763863	1.00[AMR][1000 genomes]
rs6768485	1.00[AMR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019709	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019732	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019733	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs7612186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156477800-156481000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:156477800-156481200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:156477800-156481200	Enhancers	NHEK	skin
4	chr3:156478000-156480000	Enhancers	NHDF-Ad	bronchial
5	chr3:156478000-156481000	Enhancers	HMEC	breast
6	chr3:156478000-156482200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:156478000-156483400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:156478000-156483800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:156478200-156480200	Enhancers	K562	blood
10	chr3:156478200-156481000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156478200-156481000	Enhancers	HSMM	muscle
12	chr3:156478200-156481200	Enhancers	Osteobl	bone
13	chr3:156478200-156483600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156478400-156481000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:156478400-156481000	Enhancers	HSMMtube	muscle
16	chr3:156478600-156479800	Weak transcription	Fetal Kidney	kidney
17	chr3:156478800-156480600	Enhancers	Brain Substantia Nigra	brain
18	chr3:156478800-156481000	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:156478800-156481200	Enhancers	Fetal Stomach	stomach
20	chr3:156479000-156480000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:156479000-156480000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:156479000-156480000	Weak transcription	Fetal Lung	lung
23	chr3:156479000-156480000	Weak transcription	Psoas Muscle	Psoas
24	chr3:156479000-156480000	Weak transcription	NHLF	lung
25	chr3:156479200-156480000	Weak transcription	NH-A	brain
26	chr3:156479200-156480200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:156479200-156480400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:156479200-156480400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:156479200-156481600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:156479400-156479800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:156479400-156479800	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:156479400-156479800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:156479400-156481800	Weak transcription	GM12878-XiMat	blood
34	chr3:156479400-156483200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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