Variant report

Variant	rs12106760
Chromosome Location	chr3:156306713-156306714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156301681..156303302-chr3:156305027..156307141,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11918032	1.00[EUR][1000 genomes]
rs11918873	1.00[EUR][1000 genomes]
rs11918949	1.00[EUR][1000 genomes]
rs11925276	1.00[EUR][1000 genomes]
rs12106846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs16826037	1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs16826607	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61363943	0.83[AMR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[EUR][1000 genomes]
rs73015891	1.00[EUR][1000 genomes]
rs73017741	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019707	1.00[EUR][1000 genomes]
rs73019709	1.00[EUR][1000 genomes]
rs73019730	1.00[EUR][1000 genomes]
rs73019732	1.00[EUR][1000 genomes]
rs73019733	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs7612186	1.00[EUR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7623810	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]
rs9828203	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156302000-156306800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:156302600-156311200	Weak transcription	K562	blood
3	chr3:156303600-156307400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:156304000-156307400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:156304400-156307400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:156305400-156311800	Weak transcription	HepG2	liver
7	chr3:156305600-156307400	Enhancers	Fetal Heart	heart
8	chr3:156305600-156311000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:156305600-156311200	Weak transcription	Liver	Liver
10	chr3:156305600-156311400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:156305800-156306800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:156305800-156310600	Weak transcription	Fetal Intestine Large	intestine
13	chr3:156305800-156310600	Weak transcription	Fetal Intestine Small	intestine
14	chr3:156305800-156311200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:156305800-156311200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:156305800-156311200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:156305800-156312000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:156306600-156307200	Enhancers	GM12878-XiMat	blood

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