Variant report

Variant	rs11918873
Chromosome Location	chr3:156506889-156506890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156498434..156501596-chr3:156502537..156507306,7	K562	blood:
2	chr3:156506224..156508447-chr3:156509978..156512261,2	K562	blood:
3	chr3:156503226..156505868-chr3:156506509..156508157,2	MCF-7	breast:
4	chr3:156506437..156508215-chr3:156511919..156513622,2	K562	blood:
5	chr3:156497858..156501596-chr3:156502537..156507306,7	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11918032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921057	1.00[EUR][1000 genomes]
rs11925276	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs7612186	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156494600-156510800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:156499000-156507400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:156500200-156508800	Enhancers	HMEC	breast
4	chr3:156500400-156510800	Weak transcription	Stomach Mucosa	stomach
5	chr3:156501000-156510800	Weak transcription	Gastric	stomach
6	chr3:156502200-156507600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:156502400-156510600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:156502600-156510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:156502800-156509000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:156502800-156510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:156502800-156510800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:156502800-156528400	Weak transcription	Esophagus	oesophagus
13	chr3:156502800-156529000	Weak transcription	Liver	Liver
14	chr3:156503000-156507200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:156504000-156507200	Enhancers	K562	blood
16	chr3:156504000-156507400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:156504000-156509200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:156504200-156508800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:156504200-156516400	Weak transcription	Primary B cells from cord blood	blood
20	chr3:156504600-156507000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:156504800-156508600	Enhancers	HSMM	muscle
22	chr3:156505000-156507000	Enhancers	Hela-S3	cervix
23	chr3:156505000-156507400	Enhancers	NHLF	lung
24	chr3:156505000-156510600	Weak transcription	GM12878-XiMat	blood
25	chr3:156505200-156510600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:156505200-156512400	Weak transcription	Pancreas	Pancrea
27	chr3:156505600-156507200	Enhancers	HUVEC	blood vessel
28	chr3:156505600-156507400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:156505600-156507400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr3:156505800-156507400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:156505800-156507400	Flanking Active TSS	A549	lung
32	chr3:156506000-156507200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr3:156506000-156507200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:156506200-156508400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr3:156506200-156509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:156506400-156507000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:156506400-156507200	Flanking Active TSS	NHEK	skin
38	chr3:156506600-156507000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:156506600-156507200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:156506600-156507200	Enhancers	HSMMtube	muscle
41	chr3:156506600-156507400	Enhancers	NH-A	brain
42	chr3:156506600-156508000	Enhancers	Osteobl	bone
43	chr3:156506600-156508400	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr3:156506600-156511400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:156506800-156508400	Enhancers	NHDF-Ad	bronchial

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