Variant report

Variant	rs56984599
Chromosome Location	chr3:156735455-156735456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-6F2.7.1-4	chr3:156735131-156735485	NONHSAT092876

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11918032	1.00[EUR][1000 genomes]
rs11918873	1.00[EUR][1000 genomes]
rs11918949	1.00[EUR][1000 genomes]
rs11921057	1.00[EUR][1000 genomes]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	1.00[EUR][1000 genomes]
rs16827209	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs57454874	1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs58897582	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441110	1.00[EUR][1000 genomes]
rs6778746	1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs6791852	1.00[EUR][1000 genomes]
rs6793139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156715600-156743600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156735400-156740800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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