Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156875185..156880246-chr3:156915839..156922107,12	K562	blood:
2	chr3:156872801..156875141-chr3:156917968..156922076,3	K562	blood:
3	chr3:156892903..156894645-chr3:156919643..156921144,2	K562	blood:
4	chr3:156875185..156879753-chr3:156915839..156922107,8	K562	blood:
5	chr3:156919699..156922088-chr3:156955960..156958595,2	K562	blood:
6	chr3:156891845..156893389-chr3:156917560..156921097,3	MCF-7	breast:
7	chr3:156875720..156879203-chr3:156917751..156922284,5	MCF-7	breast:
8	chr3:156875709..156878595-chr3:156916349..156920525,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction
ENSG00000243176	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	1.00[EUR][1000 genomes]
rs16827209	1.00[EUR][1000 genomes]
rs16827338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827388	1.00[EUR][1000 genomes]
rs16827505	1.00[EUR][1000 genomes]
rs16827540	1.00[EUR][1000 genomes]
rs2047651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs60385066	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	1.00[EUR][1000 genomes]
rs6778746	1.00[EUR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[EUR][1000 genomes]
rs7623236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156905000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156918000-156920400	Enhancers	Fetal Brain Male	brain
3	chr3:156919400-156929000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:156919600-156922400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:156919600-156922400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:156919600-156922400	Weak transcription	HUVEC	blood vessel
7	chr3:156919600-156922400	Weak transcription	NHDF-Ad	bronchial
8	chr3:156919600-156928800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:156919800-156922200	Weak transcription	Osteobl	bone
10	chr3:156919800-156922400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:156919800-156922400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:156919800-156922400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:156919800-156922600	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:156920000-156922400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:156920000-156922400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:156920000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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