Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:156957752..156961185-chr3:156962599..156965057,3	K562	blood:
2	chr3:156875949..156879097-chr3:156957620..156960607,3	K562	blood:
3	chr3:156919699..156922088-chr3:156955960..156958595,2	K562	blood:
4	chr3:156875663..156878601-chr3:156956786..156959531,4	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	1.00[EUR][1000 genomes]
rs16827209	1.00[EUR][1000 genomes]
rs16827388	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16827505	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16827540	1.00[EUR][1000 genomes]
rs2047651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs34655398	1.00[EUR][1000 genomes]
rs4541362	0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57454874	1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60385066	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	1.00[EUR][1000 genomes]
rs6778746	1.00[EUR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[EUR][1000 genomes]
rs7623236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
2	chr3:156955600-156959400	Enhancers	Osteobl	bone
3	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
4	chr3:156956800-156959400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:156957000-156959000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:156957000-156959000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:156957000-156959400	Enhancers	HUVEC	blood vessel
8	chr3:156957200-156958400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:156957200-156959400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:156957200-156965200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:156957400-156959000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:156957400-156960400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:156957400-156962600	Weak transcription	NHDF-Ad	bronchial
14	chr3:156957400-156965000	Weak transcription	Primary T cells from cord blood	blood
15	chr3:156957400-156965000	Weak transcription	Fetal Stomach	stomach
16	chr3:156957600-156964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:156957600-156966600	Weak transcription	Lung	lung
18	chr3:156957800-156958800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:156958200-156958400	Enhancers	Primary B cells from cord blood	blood

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