Variant report
| Variant | rs7623236 |
|---|---|
| Chromosome Location | chr3:156936786-156936787 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156876962..156878616-chr3:156936583..156938253,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000163660 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1482867 | 1.00[EUR][1000 genomes] |
| rs16827190 | 1.00[EUR][1000 genomes] |
| rs16827209 | 1.00[EUR][1000 genomes] |
| rs16827338 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16827388 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16827505 | 1.00[EUR][1000 genomes] |
| rs16827540 | 1.00[EUR][1000 genomes] |
| rs2047651 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2222405 | 1.00[EUR][1000 genomes] |
| rs34655398 | 1.00[EUR][1000 genomes] |
| rs4541362 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56984599 | 1.00[EUR][1000 genomes] |
| rs57454874 | 1.00[EUR][1000 genomes] |
| rs58897582 | 1.00[EUR][1000 genomes] |
| rs59516322 | 1.00[EUR][1000 genomes] |
| rs59536677 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60385066 | 1.00[EUR][1000 genomes] |
| rs61469347 | 1.00[EUR][1000 genomes] |
| rs6441110 | 1.00[EUR][1000 genomes] |
| rs6778746 | 1.00[EUR][1000 genomes] |
| rs6784920 | 1.00[EUR][1000 genomes] |
| rs6791852 | 1.00[EUR][1000 genomes] |
| rs6793139 | 1.00[EUR][1000 genomes] |
| rs73029526 | 1.00[EUR][1000 genomes] |
| rs7612563 | 1.00[EUR][1000 genomes] |
| rs7621847 | 1.00[EUR][1000 genomes] |
| rs7634624 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829766 | chr3:156811536-157020551 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 144 gene(s) | inside rSNPs | diseases |
| 2 | nsv877687 | chr3:156924793-157044184 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156936600-156937400 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
