Variant report

Variant	rs16827209
Chromosome Location	chr3:156798708-156798709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156797976..156800276-chr3:156807630..156809502,2	K562	blood:
2	chr3:156797096..156799390-chr3:156846319..156848431,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241135	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11921057	1.00[EUR][1000 genomes]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778746	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778851	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
2	chr3:156789200-156799200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:156792400-156799000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:156793600-156799200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
6	chr3:156793800-156799200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:156793800-156799200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:156793800-156799200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:156793800-156799600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:156794000-156799000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:156794000-156799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:156794000-156799200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:156794000-156799400	Weak transcription	Fetal Thymus	thymus
14	chr3:156794000-156799800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:156794200-156799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:156794200-156799000	Weak transcription	HMEC	breast
17	chr3:156794200-156799200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:156794200-156799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:156794200-156804000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:156794400-156798800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:156794400-156799200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:156794400-156799600	Weak transcription	Liver	Liver
23	chr3:156795000-156805000	Weak transcription	Right Ventricle	heart
24	chr3:156795400-156799000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:156795400-156799200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:156795400-156799200	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:156795600-156799000	Weak transcription	HSMM	muscle
28	chr3:156795600-156799200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr3:156795600-156799200	Weak transcription	Brain Anterior Caudate	brain
30	chr3:156795600-156799400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:156795600-156799800	Weak transcription	Left Ventricle	heart
32	chr3:156795800-156799200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:156796000-156799000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:156796000-156799200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:156796200-156799000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:156796200-156799000	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:156796200-156799200	Weak transcription	Brain Angular Gyrus	brain
38	chr3:156796200-156799200	Weak transcription	Brain Substantia Nigra	brain
39	chr3:156796200-156799200	Weak transcription	Fetal Muscle Leg	muscle
40	chr3:156796200-156799200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:156796200-156799200	Weak transcription	HepG2	liver
42	chr3:156796200-156799400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:156796200-156799400	Weak transcription	Pancreas	Pancrea
44	chr3:156796200-156799400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:156796200-156799600	Weak transcription	Placenta	Placenta
46	chr3:156796200-156799600	Weak transcription	Psoas Muscle	Psoas
47	chr3:156796200-156799800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:156796200-156799800	Weak transcription	Adipose Nuclei	Adipose
49	chr3:156796800-156799000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:156796800-156799000	Weak transcription	HSMMtube	muscle

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