Variant report

Variant	rs6441110
Chromosome Location	chr3:156800874-156800875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156391303..156393983-chr3:156799964..156801825,2	MCF-7	breast:
2	chr3:156391970..156394815-chr3:156799472..156801135,3	MCF-7	breast:
3	chr3:156799577..156801238-chr3:156877640..156879746,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNL1-1	chr3:156799456-156801064	ENSG00000243629
2	lnc-CCNL1-1	chr3:156799456-156801064	NR_034007
3	lnc-CCNL1-1	chr3:156799457-156801064	XLOC_003303

No data

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11921057	1.00[EUR][1000 genomes]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827204	0.92[YRI][hapmap]
rs16827209	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6778746	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778851	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
2	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:156794200-156804000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:156795000-156805000	Weak transcription	Right Ventricle	heart
5	chr3:156796800-156803000	Weak transcription	Right Atrium	heart
6	chr3:156797800-156801400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:156798200-156803600	Weak transcription	Fetal Brain Female	brain
8	chr3:156798200-156805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:156798800-156801400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:156799000-156801000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:156799000-156801000	Enhancers	Brain Hippocampus Middle	brain
12	chr3:156799000-156801000	Enhancers	NHDF-Ad	bronchial
13	chr3:156799000-156801200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:156799000-156801200	Enhancers	Osteobl	bone
15	chr3:156799000-156801600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:156799000-156804600	Enhancers	Fetal Heart	heart
17	chr3:156799200-156801000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:156799200-156801000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:156799200-156801200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:156799200-156801400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:156799200-156801400	Enhancers	NHLF	lung
22	chr3:156799400-156801000	Enhancers	Fetal Brain Male	brain
23	chr3:156799400-156801000	Enhancers	K562	blood
24	chr3:156799400-156801400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:156799600-156801000	Enhancers	Liver	Liver
26	chr3:156799600-156801000	Enhancers	Esophagus	oesophagus
27	chr3:156799600-156804000	Weak transcription	Brain Germinal Matrix	brain
28	chr3:156799800-156801600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:156799800-156801600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:156800000-156803000	Weak transcription	Psoas Muscle	Psoas
31	chr3:156800000-156803000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:156800000-156803600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:156800000-156804000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:156800000-156804000	Weak transcription	Fetal Intestine Large	intestine
35	chr3:156800000-156804200	Weak transcription	Fetal Lung	lung
36	chr3:156800000-156804600	Weak transcription	Stomach Mucosa	stomach
37	chr3:156800000-156804600	Weak transcription	A549	lung
38	chr3:156800000-156804800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr3:156800000-156805000	Weak transcription	HUVEC	blood vessel
40	chr3:156800000-156805200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:156800000-156805200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:156800000-156805200	Weak transcription	Fetal Kidney	kidney
43	chr3:156800000-156805200	Weak transcription	Small Intestine	intestine
44	chr3:156800000-156805600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr3:156800000-156805600	Weak transcription	Fetal Thymus	thymus
46	chr3:156800000-156806000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:156800200-156801400	Enhancers	NH-A	brain
48	chr3:156800200-156803200	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:156800200-156803800	Weak transcription	GM12878-XiMat	blood
50	chr3:156800200-156803800	Weak transcription	HSMMtube	muscle

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