Variant report

Variant	rs16827204
Chromosome Location	chr3:156797034-156797035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156796738..156798688-chr3:156803752..156805514,2	K562	blood:
2	chr3:156795065..156797909-chr3:156803634..156806168,2	MCF-7	breast:
3	chr3:156790821..156793384-chr3:156795606..156798078,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16827190	0.92[YRI][hapmap]
rs6441110	0.92[YRI][hapmap]
rs6778746	1.00[MEX][hapmap];0.92[YRI][hapmap]
rs6778851	0.92[YRI][hapmap]
rs7621847	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
2	chr3:156789200-156799200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:156790800-156797200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156792400-156799000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:156793400-156798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156793600-156799200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
8	chr3:156793800-156799200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:156793800-156799200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:156793800-156799200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:156793800-156799600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:156794000-156799000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:156794000-156799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:156794000-156799200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:156794000-156799400	Weak transcription	Fetal Thymus	thymus
16	chr3:156794000-156799800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:156794200-156797600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:156794200-156799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:156794200-156799000	Weak transcription	HMEC	breast
20	chr3:156794200-156799200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:156794200-156799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:156794200-156804000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:156794400-156798800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:156794400-156799200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:156794400-156799600	Weak transcription	Liver	Liver
26	chr3:156795000-156797200	Enhancers	Fetal Heart	heart
27	chr3:156795000-156805000	Weak transcription	Right Ventricle	heart
28	chr3:156795400-156799000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:156795400-156799200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:156795400-156799200	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:156795600-156799000	Weak transcription	HSMM	muscle
32	chr3:156795600-156799200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:156795600-156799200	Weak transcription	Brain Anterior Caudate	brain
34	chr3:156795600-156799400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:156795600-156799800	Weak transcription	Left Ventricle	heart
36	chr3:156795800-156799200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:156796000-156797400	Weak transcription	Fetal Kidney	kidney
38	chr3:156796000-156799000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:156796000-156799200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:156796200-156797600	Weak transcription	GM12878-XiMat	blood
41	chr3:156796200-156799000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:156796200-156799000	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:156796200-156799200	Weak transcription	Brain Angular Gyrus	brain
44	chr3:156796200-156799200	Weak transcription	Brain Substantia Nigra	brain
45	chr3:156796200-156799200	Weak transcription	Fetal Muscle Leg	muscle
46	chr3:156796200-156799200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:156796200-156799200	Weak transcription	HepG2	liver
48	chr3:156796200-156799400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:156796200-156799400	Weak transcription	Pancreas	Pancrea
50	chr3:156796200-156799400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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