Variant report

Variant	rs16827190
Chromosome Location	chr3:156794119-156794120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156531546..156534096-chr3:156793933..156795686,2	MCF-7	breast:
2	chr3:156543082..156545930-chr3:156793952..156795579,2	MCF-7	breast:
3	chr3:156391201..156393729-chr3:156791520..156794164,3	MCF-7	breast:
4	chr3:156793826..156795675-chr3:156844629..156846569,2	K562	blood:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000197980	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11921057	1.00[EUR][1000 genomes]
rs1482867	1.00[EUR][1000 genomes]
rs16827204	0.92[YRI][hapmap]
rs16827209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs2222405	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57454874	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778746	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778851	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156782600-156795000	Weak transcription	Fetal Heart	heart
2	chr3:156782800-156795000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:156788200-156794800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
5	chr3:156789200-156799200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:156790800-156797200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156791400-156794400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:156791400-156796800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:156791600-156794400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:156791600-156794400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:156791600-156795400	Enhancers	Brain Substantia Nigra	brain
12	chr3:156791600-156796200	Enhancers	Brain Angular Gyrus	brain
13	chr3:156791800-156796000	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:156792000-156795200	Weak transcription	Fetal Kidney	kidney
15	chr3:156792400-156799000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:156792600-156795000	Weak transcription	Pancreas	Pancrea
17	chr3:156793000-156795000	Weak transcription	Left Ventricle	heart
18	chr3:156793200-156796600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:156793400-156794200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:156793400-156794200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:156793400-156794200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr3:156793400-156794400	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr3:156793400-156794400	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr3:156793400-156794400	Enhancers	Osteobl	bone
25	chr3:156793400-156795400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr3:156793400-156796200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:156793400-156796800	Enhancers	HSMMtube	muscle
28	chr3:156793400-156797000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr3:156793400-156797000	Enhancers	Rectal Smooth Muscle	rectum
30	chr3:156793400-156798200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:156793600-156794200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:156793600-156794200	Enhancers	HSMM	muscle
33	chr3:156793600-156794400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:156793600-156794400	Enhancers	Liver	Liver
35	chr3:156793600-156795000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:156793600-156795000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:156793600-156799200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:156793600-156806000	Weak transcription	Primary T cells from cord blood	blood
39	chr3:156793800-156794200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr3:156793800-156794200	Enhancers	HMEC	breast
41	chr3:156793800-156795200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:156793800-156795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:156793800-156799200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:156793800-156799200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:156793800-156799200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:156793800-156799600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:156794000-156794200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:156794000-156794200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:156794000-156794200	Enhancers	Colon Smooth Muscle	Colon
50	chr3:156794000-156794200	Enhancers	Duodenum Smooth Muscle	Duodenum

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