Variant report

Variant	rs2222405
Chromosome Location	chr3:156975213-156975214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156974074..156978072-chr3:156979844..156983022,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1482867	1.00[EUR][1000 genomes]
rs16827190	1.00[EUR][1000 genomes]
rs16827209	1.00[EUR][1000 genomes]
rs16827338	1.00[EUR][1000 genomes]
rs16827388	1.00[EUR][1000 genomes]
rs16827505	1.00[EUR][1000 genomes]
rs16827540	1.00[EUR][1000 genomes]
rs16827707	1.00[EUR][1000 genomes]
rs2047651	1.00[EUR][1000 genomes]
rs34655398	1.00[EUR][1000 genomes]
rs4541362	1.00[EUR][1000 genomes]
rs57454874	1.00[EUR][1000 genomes]
rs58676330	1.00[EUR][1000 genomes]
rs59516322	1.00[EUR][1000 genomes]
rs59536677	1.00[EUR][1000 genomes]
rs60385066	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6441110	1.00[EUR][1000 genomes]
rs6441131	1.00[EUR][1000 genomes]
rs6778746	1.00[EUR][1000 genomes]
rs6784920	1.00[EUR][1000 genomes]
rs6791852	1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs7612563	1.00[EUR][1000 genomes]
rs7621847	1.00[EUR][1000 genomes]
rs7623236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967000-156979000	Weak transcription	HSMMtube	muscle
2	chr3:156967200-156982000	Weak transcription	Lung	lung
3	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:156967200-157000000	Weak transcription	NH-A	brain
6	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:156968000-156976400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:156968000-156981800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156972800-156978400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:156973400-156975400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr3:156973400-156975400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:156973400-156975600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:156973800-156976600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:156974000-156982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:156974200-156975400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:156974200-156976200	Weak transcription	HUVEC	blood vessel
17	chr3:156974200-156979000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:156974400-156975400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:156974400-156975800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:156974600-156975600	Enhancers	Osteobl	bone
21	chr3:156974800-156975600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr3:156975000-156975400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:156975000-156975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:156975000-156975600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:156975200-156975800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:156975200-156979600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:156975200-156980600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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