Variant report

Variant	rs73021801
Chromosome Location	chr3:156548373-156548374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156537180..156540050-chr3:156547950..156549740,2	K562	blood:
2	chr3:156544049..156546693-chr3:156547441..156549158,2	K562	blood:

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11918032	1.00[EUR][1000 genomes]
rs11918873	1.00[EUR][1000 genomes]
rs11918949	1.00[EUR][1000 genomes]
rs11921057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925276	1.00[EUR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56984599	1.00[EUR][1000 genomes]
rs57676345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58897582	1.00[EUR][1000 genomes]
rs61469347	1.00[EUR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[EUR][1000 genomes]
rs6789293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793139	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[EUR][1000 genomes]
rs73015891	1.00[EUR][1000 genomes]
rs73017741	1.00[EUR][1000 genomes]
rs73019707	1.00[EUR][1000 genomes]
rs73019709	1.00[EUR][1000 genomes]
rs73019730	1.00[EUR][1000 genomes]
rs73019732	1.00[EUR][1000 genomes]
rs73019733	1.00[EUR][1000 genomes]
rs73021795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025844	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025863	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025901	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027753	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs73029521	1.00[EUR][1000 genomes]
rs73029526	1.00[EUR][1000 genomes]
rs7612186	1.00[EUR][1000 genomes]
rs7623810	1.00[EUR][1000 genomes]
rs7634624	1.00[EUR][1000 genomes]
rs7635251	1.00[AMR][1000 genomes]
rs7645166	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156545000-156559600	Weak transcription	Pancreas	Pancrea
2	chr3:156545200-156549800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:156545400-156551000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:156545600-156554000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:156545800-156558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:156546000-156549400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:156546000-156549800	Weak transcription	GM12878-XiMat	blood
8	chr3:156547000-156550200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:156547400-156548400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr3:156548000-156548400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr3:156548000-156548400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr3:156548000-156548600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr3:156548000-156549000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr3:156548000-156550200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr3:156548000-156551200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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