Variant report

Variant	rs73014000
Chromosome Location	chr3:156408481-156408482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156391939..156394186-chr3:156406750..156409428,2	K562	blood:
2	chr3:156407951..156412215-chr3:156529722..156531947,3	MCF-7	breast:
3	chr3:156407636..156412375-chr3:156415466..156420598,10	K562	blood:
4	chr3:156407850..156409801-chr3:156437038..156439312,2	K562	blood:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11918032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921057	1.00[EUR][1000 genomes]
rs11925276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs6763863	1.00[AMR][1000 genomes]
rs6768485	1.00[AMR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs72558059	1.00[AMR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs7612186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156394200-156412600	Weak transcription	Placenta	Placenta
3	chr3:156394400-156411800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:156395800-156408600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:156396400-156408800	Weak transcription	Colonic Mucosa	Colon
7	chr3:156396400-156413000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:156396400-156414400	Weak transcription	Thymus	Thymus
9	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:156396600-156441000	Weak transcription	Lung	lung
11	chr3:156397800-156413000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:156398400-156408800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:156398600-156409600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:156399200-156412400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:156399800-156408600	Genic enhancers	NHEK	skin
16	chr3:156399800-156410200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:156399800-156411200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:156399800-156411400	Weak transcription	Fetal Thymus	thymus
19	chr3:156399800-156411800	Enhancers	Brain Hippocampus Middle	brain
20	chr3:156399800-156413200	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:156400000-156412200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:156400400-156411600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:156401600-156409400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:156402600-156410800	Enhancers	Liver	Liver
25	chr3:156402800-156409400	Enhancers	Fetal Heart	heart
26	chr3:156403400-156409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:156403400-156421800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:156403600-156409200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:156403600-156412000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:156403800-156408800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:156403800-156409600	Genic enhancers	HMEC	breast
32	chr3:156403800-156412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:156403800-156413800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:156404000-156408600	Weak transcription	Adipose Nuclei	Adipose
35	chr3:156404000-156410000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr3:156404000-156410000	Enhancers	Brain Anterior Caudate	brain
37	chr3:156404000-156411400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr3:156404000-156411800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:156404000-156413000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:156404200-156408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:156404400-156410800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:156404600-156409800	Enhancers	Brain Cingulate Gyrus	brain
43	chr3:156404600-156411400	Weak transcription	Primary B cells from cord blood	blood
44	chr3:156404600-156411800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:156404800-156409600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr3:156405000-156411600	Weak transcription	Primary T cells from cord blood	blood
47	chr3:156405200-156409600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:156405200-156412200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr3:156405600-156409000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
50	chr3:156405600-156410000	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links