Variant report

Variant	rs6768485
Chromosome Location	chr3:156260267-156260268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156260069..156260789-chr3:156355314..156356125,5	MCF-7	breast:
2	chr3:156259833..156260828-chr3:156355203..156356175,21	MCF-7	breast:
3	chr3:156259525..156261861-chr3:156271403..156274258,3	MCF-7	breast:
4	chr3:156260163..156261184-chr3:156530021..156530957,10	MCF-7	breast:
5	chr3:156257972..156262357-chr3:156268019..156272928,6	MCF-7	breast:
6	chr3:156259679..156260393-chr3:156391616..156392305,2	MCF-7	breast:
7	chr3:156259842..156261109-chr3:156529984..156531073,17	MCF-7	breast:
8	chr3:156200778..156201340-chr3:156259988..156260707,2	MCF-7	breast:
9	chr3:156260089..156261596-chr3:156391729..156393636,2	MCF-7	breast:
10	chr3:156259874..156260775-chr3:156530012..156530938,9	MCF-7	breast:
11	chr3:156259842..156260746-chr3:156391555..156392473,8	MCF-7	breast:
12	chr3:156259847..156260725-chr3:156355203..156356175,11	MCF-7	breast:
13	chr3:156244452..156246713-chr3:156259081..156262039,2	K562	blood:
14	chr3:156259810..156260746-chr3:156391555..156392473,6	MCF-7	breast:
15	chr3:156259529..156263579-chr3:156391738..156394703,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11925276	1.00[AMR][1000 genomes]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs3821687	1.00[CEU][hapmap]
rs6763863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788106	1.00[AMR][1000 genomes]
rs72558059	1.00[AMR][1000 genomes]
rs73014000	1.00[AMR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes]
rs73017741	1.00[AMR][1000 genomes]
rs73019707	1.00[AMR][1000 genomes]
rs73019709	1.00[AMR][1000 genomes]
rs7612186	1.00[AMR][1000 genomes]
rs7623810	1.00[AMR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156246800-156263600	Weak transcription	Fetal Brain Female	brain
2	chr3:156247200-156263800	Weak transcription	Thymus	Thymus
3	chr3:156249000-156264600	Weak transcription	Brain Germinal Matrix	brain
4	chr3:156252000-156263200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:156252000-156270200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:156252200-156268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:156253400-156260800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156253400-156268200	Weak transcription	Gastric	stomach
9	chr3:156253600-156268200	Weak transcription	Small Intestine	intestine
10	chr3:156253600-156271400	Weak transcription	Stomach Mucosa	stomach
11	chr3:156253800-156260800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:156253800-156260800	Weak transcription	Right Ventricle	heart
13	chr3:156253800-156261200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:156253800-156261400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:156253800-156270800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr3:156254200-156270200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:156254600-156265400	Strong transcription	Liver	Liver
18	chr3:156255200-156268600	Strong transcription	Dnd41	blood
19	chr3:156255200-156270600	Strong transcription	A549	lung
20	chr3:156255600-156261200	Strong transcription	NHDF-Ad	bronchial
21	chr3:156255600-156261400	Strong transcription	Osteobl	bone
22	chr3:156255600-156263200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:156255600-156270800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:156255800-156261200	Weak transcription	Brain Anterior Caudate	brain
25	chr3:156255800-156270200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:156255800-156270200	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:156255800-156270600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr3:156255800-156270800	Strong transcription	Fetal Intestine Large	intestine
29	chr3:156256000-156268600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:156256200-156263800	Strong transcription	NHEK	skin
31	chr3:156256200-156264400	Strong transcription	HMEC	breast
32	chr3:156256200-156270400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:156256200-156270400	Strong transcription	Primary hematopoietic stem cells	blood
34	chr3:156256400-156264600	Strong transcription	K562	blood
35	chr3:156256400-156270400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:156256600-156267200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:156256600-156267400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:156256600-156270600	Strong transcription	Primary B cells from cord blood	blood
39	chr3:156256800-156261000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:156256800-156261600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:156256800-156262200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:156256800-156264400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:156256800-156264400	Strong transcription	GM12878-XiMat	blood
44	chr3:156256800-156266800	Strong transcription	Fetal Muscle Leg	muscle
45	chr3:156256800-156269400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:156256800-156269600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:156256800-156270600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr3:156256800-156271000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:156257000-156262800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:156257000-156263200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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