Variant report

Variant	rs72558059
Chromosome Location	chr3:156233123-156233124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs6763863	1.00[AMR][1000 genomes]
rs6768485	1.00[AMR][1000 genomes]
rs73014000	1.00[AMR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes]
rs7612186	1.00[AMR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156211000-156234000	Weak transcription	Aorta	Aorta
2	chr3:156225000-156234400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:156227600-156233200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:156227600-156233400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:156227600-156234000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:156227600-156246000	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:156229600-156236600	Weak transcription	Pancreas	Pancrea
8	chr3:156230200-156251000	Weak transcription	Left Ventricle	heart
9	chr3:156230400-156235600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:156230600-156234000	Weak transcription	Fetal Heart	heart
11	chr3:156231600-156234800	Weak transcription	NHLF	lung
12	chr3:156231600-156240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:156231800-156233800	Weak transcription	K562	blood
14	chr3:156231800-156234000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:156231800-156234000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:156231800-156234000	Weak transcription	HMEC	breast
17	chr3:156231800-156234600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:156231800-156234600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:156231800-156236400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:156232200-156233800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:156232200-156234000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:156232200-156249200	Weak transcription	Gastric	stomach
23	chr3:156232400-156233200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:156232400-156233400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:156232600-156234000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:156232600-156234400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr3:156232800-156233400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr3:156232800-156233600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:156233000-156233400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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