Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:156279739..156281832-chr3:156282650..156285022,2	K562	blood:
2	chr3:156275181..156279220-chr3:156281237..156284848,5	K562	blood:
3	chr3:156271269..156273059-chr3:156279808..156282164,2	K562	blood:

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11918032	1.00[AMR][1000 genomes]
rs11918873	1.00[AMR][1000 genomes]
rs11918949	1.00[AMR][1000 genomes]
rs11925276	1.00[AMR][1000 genomes]
rs12107929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs16826541	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763863	1.00[AMR][1000 genomes]
rs6768485	1.00[AMR][1000 genomes]
rs6788106	1.00[AMR][1000 genomes]
rs72558059	1.00[AMR][1000 genomes]
rs73014000	1.00[AMR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes]
rs73017741	1.00[AMR][1000 genomes]
rs73019707	1.00[AMR][1000 genomes]
rs73019709	1.00[AMR][1000 genomes]
rs73019730	1.00[AMR][1000 genomes]
rs73019732	1.00[AMR][1000 genomes]
rs73019733	1.00[AMR][1000 genomes]
rs7612186	1.00[AMR][1000 genomes]
rs7623810	1.00[AMR][1000 genomes]
rs7631469	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]
rs7653891	0.91[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156273800-156281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:156279400-156282400	Enhancers	Fetal Heart	heart
3	chr3:156280600-156283400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:156280800-156282000	Enhancers	GM12878-XiMat	blood
5	chr3:156281000-156281800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:156281200-156281600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr3:156281400-156282200	Enhancers	Stomach Mucosa	stomach
8	chr3:156281400-156282600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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